NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10065086

Scaffold Ga0214919_10065086


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10065086 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3340
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002092Metagenome / Metatranscriptome594Y
F010320Metagenome / Metatranscriptome305Y
F018537Metagenome234Y
F030760Metagenome / Metatranscriptome184N
F059953Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1006508610F018537N/AMASNRTSNYIATIPMKNEEQVLEVKKVLEQIFGWVTLRGRHSDRKSVVKSWGKSRQNDVPWRVAQYIDIYLHHANPNRIRIWKKQGMERKNLSLSDTNVMIARTLGSMGYSLADGVKHTKQSRPSSPLMAIKELQYQTKMQDPKFQRKEMKRKYMNKSYKLQKGDWGYITQELLDYTYLCQFVTFTQLKKHYDIVIRGNSSSQNGGSFIHY
Ga0214919_100650864F010320N/AMNYYQIVAFAQQLKKENMKTNNDAFINDAYNEESKLHIEFIDEVKTHDYSYMMSDDHNVYMRGRNNEKQIEEKLHALINICRYDGHDLLDEVISLVPQQYNDIDSNGNDLTHRVIRGWFKPYVFDNFEL
Ga0214919_100650867F059953N/AMNLELTLMELNDLYYVVSKGVESHKEFVEIAKRTTPELEKYFEKELSKSVQLLDKIQTALHNEYQVMDDEPEYDSAGFTEDDRMQEVKSEKKLFTLNNDR
Ga0214919_100650868F002092N/AMRTTDKKTIEYLNNNSIVNDFINKVNIQRQDYYIKADMPSQFQPIIAELGSKYIRLWVGTSCWGFISRVDGDLKGSPIKKGDLLKAATWKAPAKHARGNIIDGTARYGIYGPEYL
Ga0214919_100650869F030760GGAMVSMGLNIFNMNYKTLHDIEIVSQSGDKITIKGLSYSVIMTIAKSNTELQSITITKQYDKKIK
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