NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10059431

Scaffold Ga0214919_10059431


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10059431 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3558
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014137Metagenome / Metatranscriptome265Y
F017826Metagenome / Metatranscriptome238Y
F031867Metagenome181N
F084236Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100594312F017826N/AMDNNKIKRIWNLVLVPTAFFLGALNMWIGETAVGCLFILFATNETINRDNEITNR
Ga0214919_100594314F031867N/AMKIIYMQRTIEMIVKNEIELSADSLLQTKPTRVETHKEQNYLVYEFDNKEL
Ga0214919_100594317F014137GGAMLKIKNIQTIIGETYNELFNIIGVKEEKSYYEFTLGYATVGKPNYETILLHRKQTDNGMYIMEYNNKTLWLNTNEFDTIDKIIICMQTI
Ga0214919_100594318F084236N/AMLTIKNLYKIIAEDVVLSKNGTNEFWIVNDIDEITGVYDINILRKMGIFDTIKRTIRIQREKNELGMYSVQIIQDSKIIDKDQIRLNNIQTADGMLNELKTIMELI
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