Scaffold Ga0214919_10049332

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10049332
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4049
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F003299	Metagenome / Metatranscriptome	495	N
F004234	Metagenome / Metatranscriptome	447	Y
F015420	Metagenome / Metatranscriptome	255	Y
F071222	Metagenome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100493321	F001808	N/A	MRYLAIILLLSSCSAQYHLNKAIKKGYKCEETGDTIRIMSVDSIPVIIHDSIVWEKFITTKDTIIKYKTTYVPRTRYQERLNYKLKIKTIYKDRIVEKAQAKATRPKTRGNLSLLFVGVGIGLLLSYLFKFTKDKYLL
Ga0214919_100493323	F071222	N/A	MNKEQILKIIFTEEASLYDQAKEFQEAFGSADEATQRIVTKWIAITNLIDKINEETN
Ga0214919_100493324	F015420	N/A	MKKLINYFTPVGEEQIAFAKAFVIVVSATLSILFLFTFLEFIL
Ga0214919_100493325	F004234	N/A	MNFIDLYKNGNQYISNWTTSYDSDVYIAGTIEPFTYNASETDDEYLSMYVLDEVELNLLKSKL
Ga0214919_100493327	F003299	N/A	MCRLKMMIMKIYKVVFKTFDYWNGPVKLVTRIVEAYDADHVKQLIQKNDDLIILIEEV