Scaffold Ga0214919_10047827

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10047827
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4132
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025459	Metagenome	201	N
F041023	Metagenome	160	N
F048162	Metagenome / Metatranscriptome	148	N
F080052	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1004782710	F025459	AGGAGG	MKMTLEYDETERYEHEVACKALDILILVDDIDQELRSALKHESGAFAKLDEDTMEAVRAWIWEQRSQRNIPELK
Ga0214919_1004782711	F048162	N/A	RTEALAEAKRLLSEHYDCGFTIVSWEQGGETMHGEFVFGNKYAVEGLAGDSFSILFPDAEEEEEDEEA
Ga0214919_100478275	F041023	AGGAG	MTDEELHDAEIMFTRNILCGMIEQAVEDMRSEKVFLSKQLNDLQELDRDTALHFIRSKAFQGICDVLSLPADKIKTKALKYESRD
Ga0214919_100478276	F080052	N/A	MEPINFLILFTVCCTSAFAGGYVLGNLKSHSEAEKSRRWWMNRQIKQERR