Scaffold Ga0214919_10047522

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10047522
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4150
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006935	Metagenome	361	Y
F012774	Metagenome / Metatranscriptome	277	Y
F017132	Metagenome	242	Y
F040624	Metagenome	161	N
F047676	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100475221	F047676	N/A	MEIIITLIVLITIFGIGFLVGAKQGTNQLVNQIKKDGGYYDLEYTSSAYPILYPTSSVNDDTMEFNPPHFKDIPKWASPSSINNDTMGTIGSKPKTQTDYQMEHKAEGETPAIDFMHNWIQEKSGKKPVSQKRK
Ga0214919_100475222	F040624	N/A	MKSEKVMALYKRKKELEEQIIYWEKFQGVNWLGKWGRSVKLEVLKEKFAKIEKQIAKLKN
Ga0214919_100475224	F006935	N/A	MDKRYAKQIIEWAEEAKQTLTIRKEIIIDESVTDEKLGNIIRMMYKAKVETQNEQITKTKENARL
Ga0214919_100475226	F017132	GGA	MRKIETAKVGEDLYEIVKRLPIQKFTQEVTGEYAETLKKYYGVEKILKFHQTQEYLFVNLIEELQIQTNDNKETSESNQS
Ga0214919_100475229	F012774	N/A	VKGEPIILHIDLGNQSLTNWLKENQYIIFSELIRYSKKLLKENLTFIQAIMVSNVYDNIVFIIKRDNVKLTLDKAMDFFMDIEEYEKCVEIRDLYILIENLKNETTDTKISKSNQRGLKSNR