Scaffold Ga0214919_10040397

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10040397
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4643
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025480	Metagenome	201	Y
F029657	Metagenome	187	N
F029746	Metagenome	187	N
F068826	Metagenome / Metatranscriptome	124	N
F088878	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1004039714	F029657	N/A	MKTTCKPCITIRTFFFLLKKNYQQFRKDLKDYSYINQVSCEMPKYKAPQTIDEGMERLKHLREVAKNNYSKEKEEELLKSVVQ
Ga0214919_1004039716	F025480	AGGA	MTDRYKEKNCKFCSKTHKKRGLYCCQGCANSDREVSDKVRDNMRSVAIDYNRTPEAAVKRNQLNTPLAAMTVEDFAVDIPEIKDLSDYSEFLDGYEKGESW
Ga0214919_1004039719	F068826	N/A	MNELHQMITRCLAVGLSDRSIIELMILEGLPQEACPEILRCVKTTITDQIGQVSK
Ga0214919_100403973	F088878	GAGG	LKYWEIVYPGGEGEDCFERLSEKQILDYYFPHWCKMMAEAGKDMPPNMEQVCLDDWVVTHWAIEVEGP
Ga0214919_100403977	F029746	GGAG	MNKNFWGESNDEPLPEWMDPKTYQNPKPKRSGPSLMESIEEAMRKPPVPVDIREPKL