NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10040154

Scaffold Ga0214919_10040154


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10040154 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4664
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (58.82%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F006135Metagenome / Metatranscriptome380N
F016253Metagenome / Metatranscriptome248Y
F023096Metagenome / Metatranscriptome211N
F025727Metagenome / Metatranscriptome200N
F045750Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1004015411F045750GAGGMETVMSRIGRMLGLRMHNSNRPVCPVPQSIQTVSRGPDTVAIDKEPKKKKRKYLKSTYMKTSDSIDKVNALRADGLTYKGIGHVMNISKQRVFQIIAAGKKRDEASKQWTAGLSSRNANLMEKLGIKDKETALHAIHNRDIVPLKWKNFGLRSYHDLCAWLETPPIDPGIGRHCPHCGKTSKQ
Ga0214919_1004015412F025727N/AMSKHSYPLVECIKVVQLSDGRTVRVRRDRTDENLKTNYGDGDIHLTCVSQAHDPIEMIKTLARLESVRSVELVDSKGNGIVIHKQK
Ga0214919_1004015413F023096N/AMKQSSTHDIVNALNILSAELDTQDGIPNALCAEASTRLLELVQLTSDLTAHIISNPVHHGRCNAKTKGNYCNCILARLITP
Ga0214919_100401542F016253GGAGGMSDRIKSIIDGGTGVYSITKKEAGEIHKAAKKVKNHEVSYWTRNRKNKEAK
Ga0214919_100401548F001259AGGAGVKDSPAFVYVNKTNGIVRVESLDTAKRIDGNPEWKHVSTVNPHVILENILRAKGKERNLIIKHLLT
Ga0214919_100401549F006135N/AMSTHIKIENQTEVPILVALFEQPKCNDHPTRSAVLKPGESCDWGSGSVPLGNYQCYAVMSGDASSHDEWVWHFPGIAEVVAPLELGFKLWHAGDIDWANVKAMSSDDLNATFGSTYTSAKSSTKSWNGMSSCIFHVRGGPSWVEETEQVGIYRPKTVAYNGVQSTPMKSE
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