NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10039540

Scaffold Ga0214919_10039540


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10039540 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4717
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (100.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F003784Metagenome468Y
F003863Metagenome464Y
F004110Metagenome452Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1003954010F004110AGGMPSITLSLSKGLLVSELHPVIYDLVPSVANTIYRRYNKHVEKDDIKQELMAWAMTRAADHTEDLMEPIEERRRHNEQRIAWQMRRVAERYARKEKASKSGYQTNDEAYYESATLGQLLPFVIASIIDGTVLEQAQEMINDGQPKGSSSPAEGGNLLANLIDIKKGFLQLEQDDQALLRMRHHEGFTLQQIAQVLECAISTADRRCDKSLRRLQDNLGGVSPWQ
Ga0214919_1003954012F003784GGAMYDNDRERVGHNATDFAAYGLSHLAAGQSNTTHTHTPTTNPLVDHAAVTGYRAVGVSTEDLTSFIESFASLRAQRVKGVGHSQYAIAQGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDQVLPDCE
Ga0214919_100395403F000821AGGAGMNEEYLAAKANLCLNQAEKDIKQEEIARAIKNLERANSALYRLGLVKEGEADE
Ga0214919_100395404F001477GGAGMSNIYTIHPKKSPLILLYEVVDEEGRAEWGGNNAEHCMQWLSLAPTGSRVLVSGWESDEEDAHLVGQTLDITEIVRAASL
Ga0214919_100395405F003863GGAGGMESKEVSGKQSIHYRNYRRARDKALVRLAHLYPDTYKQLLDEQRSFDEQEGKSWIINPDSRLTIAVHTRANAVPDVAGRTDYESADESYNGGEA
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