NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10038044

Scaffold Ga0214919_10038044


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10038044 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4841
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (93.33%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F014848Metagenome / Metatranscriptome259Y
F022196Metagenome / Metatranscriptome215Y
F041568Metagenome / Metatranscriptome159Y
F044486Metagenome / Metatranscriptome154Y
F045555Metagenome / Metatranscriptome152Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1003804410F045555AGGAMTSIFIVRAEYRGAPESHIYGVYPTVELALARIAVLEGEDFGYEITWYDEVKVGPEGADCALANR
Ga0214919_1003804411F041568AGGAGMFTTDNQTALKEELNLMFSEQGAAFTAGYTNQMAQEMLRLLPKRKQKEFVNQVAAFNGRQLVTVKNCLTGQEVEIRRECQGTCNDPSRELFHTM
Ga0214919_1003804412F044486GGAMALVIAGALCTSLRIDPLNIMLLNLGALVYMIWAMRIREMNLVIVNAVLLAIYAIGLMGVQYPLG
Ga0214919_1003804413F014848AGGAMTRYYDTIAEFERDGFTVIVDKTYEDFNPRDHFEADDMDEILRKIDNGTYEWFMLRVRVLVEGLELGSAYLGGCLYEDAREVLSDGIAEDFIYEAMKEAKAQVYRLSKKFAELSEQVDRENSFA
Ga0214919_100380444F022196AGGAMSDKLKTIPSSAGGTITFTKTGLIHSAGKAYSGKIAAQEAKQKPAKSKG
Ga0214919_100380447F000652AGGAGMKAYVTTIIRQELEVPDSWERADVLDFLSEVQSFRTAFQGVSNEDQTARIIDLGVVEEEITELGEESYDA
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