Scaffold Ga0214919_10037757

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10037757
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4868
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → unclassified Methylococcaceae → Methylococcaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007911	Metagenome / Metatranscriptome	342	N
F015449	Metagenome / Metatranscriptome	254	Y
F057981	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100377572	F057981	N/A	MSDNLEQDLDDAFIAPDTFFKGDKLAPYTEGSRLLMLQVRDEADSAIYFVWSFIYIHILLAQDRRAAIKLAWDRDAFREKLLDWSENMTEEDRTTASLVCSSVLGAANKARVNVIPGALAEAAPPNA
Ga0214919_100377573	F015449	GGA	LKVAAAATAFGATLRQLDPVTCIVKEGGQRQVTFWFSSSGPDGDEARAEMERTWGEMKSDKESAIRFVRAALENRETLLGLCKHKDLQPILSIQRGGQTLLVPEKARPELKRALLNKL
Ga0214919_100377575	F007911	AGG	MAAVTMLDRLIEAAFKELISPVVTAPTYHLSHDQSENMPPSIVIKASMGSEEPVRGSGVFSVPVEIIFDESYDDATPASHSAQCSQILQCFYDATNLSARLNATTAIGSARTYSAKLESSEASADNEERTFTQNYKLSVIAYPGSIAS