NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10036650

Scaffold Ga0214919_10036650


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10036650 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4966
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F008812Metagenome / Metatranscriptome327Y
F043359Metagenome / Metatranscriptome156Y
F089832Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1003665012F089832GGAGMPKYYIKCGTLELIRDSEFGPIEVAINALYDSNKFDILDEYFYIDERGMYDYSTAKPDTTVISLRKVAKLSGWTLGKDDASD
Ga0214919_1003665014F008812GAGGMIQWIGVILTVIGLAYTGLKDYQKGEIKIPDIKKHLTPIKYPVQYCLMAYDPNVDKVFYLHENGIWHDYAPEQRRYSPTTQVRTEYQNQNQKVLAIAHGTQGTSGYRYGQSPQASTYPQR
Ga0214919_1003665016F043359AGGAGMEWNSSHKNPPKVGQKVYYFGPNIGLWIGHYSYEERSFNPYYYDENGVKVYEEKVIELCSHIFTNATFGVCDACDAPFWLPYDEEKAKCWCPIIPEEY
Ga0214919_100366508F000325N/AMPIYSVESVDIREKIMKVANGNDKLGKGCLVVSRPVGDTCPNSCAFLGNGCYAEQTEKIYPGVRPAGMQNLITERGRIRAMILDAMRQDKSIRWHERGDWFLNGELDLDYVANVTWACESILAEGKTLPDMWFYTHIYDDRLVSFEKYMNVYASVHNDEDMGAAMAQGFKKFAWCDSDQKIAPKRPRNKAKADAWRKALPKLVVLNGTKFVTCPEIRRGRGVVTCTPTKGSVSCDLCVRGLANVLFPSH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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