Scaffold Ga0214919

Basic Information
Taxon OID	3300023184 Open in IMG/M
Scaffold ID	Ga0214919_10036208 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023184 Open in IMG/M

Scaffold ID

Ga0214919_10036208 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5006
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (57.14%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

5006

Total Scaffold Genes

7 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (57.14%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay	(Source: IMG/M)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F035307	Metagenome	172	Y
F058150	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100362081	F000258	GGAGG	MTVDYKADMMLDLRKFLWSQLISNKIFTATDYYSDNIGQEIIPIIPVQQAPELNQFLSGKKHIVYDKIGLSYEDNWAICCEQVLFTIYSTDVSEINEIRNLMTDLFRRMDDSARDTNAYSGISKKFKFFSIFIADISPTSPSEELQG
Ga0214919_100362082	F035307	GGAG	LDNSSILVTAASGLQKGLAGTPGIILKDSTVAQISAAIYYQSQVVSKITTNKQFQNKFQSVIFKQLEEDFGMYIDSQARVNPKSLHHVYEWNKVGNPGSRLFKLNVISSEGLSFKINSTFLLSKSTVPNNISKRRHVFANKASVMEAGMPLTIRPRSAERLVFETDTGVVYMPKGASVTVKKPGGGAATGRFQIAYARFFTGNLVNLSIKKSGFQRLFNSSLSKAMKLPPDIKRVKYSFSPNTLNMQAESAVSAAFGGMS
Ga0214919_100362084	F058150	N/A	MEILVNSSSPITHKVFWRGQLTDADALPVVKIFDITEDPAITPPINPGVSLATLTPVKSEVDYGTYTVYIPFDYTNRQRQLRLNWVYTVNGESMYKDHKVFVQTPYTDMSQAVDALGLGSDYSDPNSKSYLELCNAERYARKLIEAYTGQQFYLYDDVQIVYGAGSDILPLPYKISELHELYQNDILLLDNLNGIDNWNYSTMISESGFGLRVNRANLLDNTVYVANGMVPPTINDTYGGAFYNGSVYRVQGTFGWEQIPDEVELACLELMKDYFSKDKVWRNKYMKSIQTFDWQFEYNSGTYAGTGNLYADQLLLPYVINKMVVV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214919_10036208

Overview

Ecosystem & Geography

Associated Families

Sequences