Scaffold Ga0214919_10034720

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10034720
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5155
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011151	Metagenome / Metatranscriptome	294	Y
F013086	Metagenome / Metatranscriptome	274	Y
F022413	Metagenome / Metatranscriptome	214	N
F029748	Metagenome	187	N
F030431	Metagenome / Metatranscriptome	185	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1003472011	F011151	GGAG	MTGFQSKRLMAQDRFKVYCEWCHDWHYTDEVDILDVEEDIEGRDVAHFECGQPPSWNEDISRYDGTSSLVYKE
Ga0214919_1003472012	F022413	AGGA	MLLAKPKLTNTLDAKQFETFAECQEYLEAYTDISMPLVEWIALGKILVAETMTAPEFYPKKVKGQIVMTKFDIEEFA
Ga0214919_1003472013	F013086	GAGG	MNQQELIGYTEREEGFEPLYAPPKGSIVTHAFILCKYCNGSIYHCMGPKHDAVCLTCYEKDPDVR
Ga0214919_100347205	F029748	GGA	MIKFLSGIAFGIFLATAGTSGIAMLIDSSVSKFQNTIKESVREQPRNNQQIKHMESI
Ga0214919_100347209	F030431	GAGG	MSEIEIQINEILDTSVMLCEEIAEQVGCPVEWVEKIVEKRWNDMLFSDADFMNGYDFAKENM