Scaffold Ga0214919_10028250

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10028250
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5944
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.56%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008359	Metagenome / Metatranscriptome	334	Y
F013759	Metagenome / Metatranscriptome	268	Y
F017826	Metagenome / Metatranscriptome	238	Y
F019136	Metagenome / Metatranscriptome	231	Y
F031867	Metagenome	181	N
F074879	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1002825013	F074879	N/A	MNVSINDIKEIETQLSITLTDVQRDKILNEYNTIMLDRGEGWDELIELLIIKQATIQILIQQNK
Ga0214919_1002825017	F008359	N/A	MNKSKVNVKSLYEIKKVKRVMRMKSEGFEPTTFEVYKVSGPNKFRKYFVSRKDAKSFIDGYTDTKMTIGIVKNIMNEIKMK
Ga0214919_100282504	F031867	N/A	MQRTIEMIVKSKIELSADSLLNTKPTRVETHKEQNYLVYEFDNNEL
Ga0214919_100282505	F019136	N/A	MSLTITNYKKLESWSHHYKEFMIGEVIETETEYSFRVGYNSTPYIIKIFRQGTSTIEYEMVLRDGADITQYGREWIAGRKLKSLELTALIFEALIVKCKPKAQQTTGNTNYSIGPF
Ga0214919_100282508	F017826	N/A	MEKLKRIWNLVLVPTAFFLGAINMWIGETAVGCMFILFATNETINNDNKTK
Ga0214919_100282509	F013759	N/A	MKVELGMSLFSKRETLLGLEITTHNGITANEDALYRERIVEFSIGICFAIFTIGFVSKGEKIDTPEMDNVQRAMKAFESEMDK