NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10026288

Scaffold Ga0214919_10026288


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10026288 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6245
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F001562Metagenome / Metatranscriptome670Y
F002489Metagenome / Metatranscriptome554Y
F005531Metagenome / Metatranscriptome397Y
F013527Metagenome / Metatranscriptome270Y
F014142Metagenome / Metatranscriptome265Y
F076101Metagenome / Metatranscriptome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1002628813F001562GGCGGMKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDPVAFAIGLVEHEDYLAEMEDES
Ga0214919_1002628816F000447GGAMGYIEFARINDEGVSWVDLSEATPDELFNMELALLNEGAFE
Ga0214919_1002628818F076101AGGAMYKITLAYDGNAPHWQKDYENEFEAWKDFFAFVDWGFADKFSTVNIYNSEMKCFTKIFYREERKVVEVK
Ga0214919_1002628819F013527AGGMKTFEFLTYINVEAENYDEAIDVFQFQLKYGMNKDNVYVADIKDLELA
Ga0214919_100262883F002489GGAGMSQNQESSNLEENLPMVNYIMLHRIYDILTLIATELVGSEKISKMVQYHDQGYLLGPSPSYTPDAEESLQDTLDLG
Ga0214919_100262888F014142AGGAGGMTNLVLEPNHPMSSSNTGDVSIFRLANGNYISRMAYVQMVASEGLISHRYLTPSESMWAISHTA
Ga0214919_100262889F005531AGAAGMTITYSLWQGSQLLSVNNKASKPEDILAIMEELNKLGKGFTFIVREVEVSK
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Institute for Fundamental Biomedical Research
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