NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10022244

Scaffold Ga0214919_10022244


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10022244 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7015
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F003422Metagenome / Metatranscriptome487Y
F005741Metagenome / Metatranscriptome391Y
F074872Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1002224410F000311N/AMYFELTAPDRLSMEMAYWEAQITGLDPEAMTPLTFNIGTGSIEKVSRLRDKFNLVESYMADQEPTGYLRG
Ga0214919_1002224411F001043GAGGMSDYKDGFADGYKFAREEITEKLAEIDINDIDSWILARLSDMIEGGQL
Ga0214919_1002224413F001125AGGCGGMGDRANFGFKQSSGETIVLYGHWAGYQMLSKLSHAVEQARPRWTDESYATRICISQLVGEDWNSETGWGLSVNRILDNEHKIPVIDWSAQTFSLHEELDGPPIFTMDLNAFCSKYSELAS
Ga0214919_100222444F074872AGGGGGMSALYVTINPYKKGSKMTVNGYTYKVGDLFTTLKSKKTGVIKEIIPNASGSVRVLLEMPTKETRWTTVSNSALV
Ga0214919_100222446F005741AGGMANRFRIEIYDANKQNDLTIYSEQGIDKEYLTELVFSNLRRFNGTVRAYVFDSLKKKKTTAMFLDEEIVDSTNAKTNLTTAKQLNLI
Ga0214919_100222449F003422N/AMTNELVSSVYTFVCDPDECDSLIQLTSSDGFGFPSGVTELTCPCGRKTTLVSVEHATIAPSTQTKEEKMEETTTPAVTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQVNMYLSKIDSVKDIITEAYADSDDQDTLRSIAEALDIELTRDVEWSATIEVSGTIQLDLLADSDTDIESEIYDNLYVESQNGNIEIVDTEVTNVREN
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