Scaffold Ga0214919_10022160

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10022160
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7034
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (77.78%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016150	Metagenome / Metatranscriptome	249	Y
F028513	Metagenome / Metatranscriptome	191	Y
F049634	Metagenome	146	Y
F058149	Metagenome / Metatranscriptome	135	N
F077308	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1002216011	F016150	GAGG	MTEKKSINPFIAMAQEAKKKNAAHPGLSKAPKQQGPKPNTKGFGGASVVRRTGRGG
Ga0214919_1002216014	F028513	AGGA	MLNQLAGYFHNLFNKFSRPQTYGSALEEYILSHSPQNTCDIDRLIHQFEISQKKNTGRLW
Ga0214919_1002216015	F058149	AGGA	MFTPDFYIELLQSSKRMATNQIFKDERMNKVANDFIDAQTVFAKMLAKNTIEMLSYAADSMSKTIYPHSEDETVKVKTEKK
Ga0214919_100221603	F049634	N/A	MIMRKYITNKFNSVFLPYEEGMIEWLNENYPHSKYVVVEII
Ga0214919_100221608	F077308	AGCAG	MHIKRFIDRVSNIESRQGKDVVIPLSDARGLRDELAKLLIDHYEVTEGKKNTSEVIQVELVGGKF