Scaffold Ga0214919_10021975

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10021975
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7073
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F010463	Metagenome	303	N
F027777	Metagenome / Metatranscriptome	193	N
F033350	Metagenome	177	N
F074559	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1002197511	F027777	AGGA	MSEELPTFWHQEPDKKKLPNETTDEWVVRVFGAFPDTEFDQRNDFRFLKLPKTQKENAEGFGVFDDGQKKQ
Ga0214919_1002197514	F005846	N/A	MTSFPLPARPQASAVPAWHIEFKKETAIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAITFDVPNNKLLRFVRLAHHKISSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPSYCSPAWQKQRIRW
Ga0214919_1002197516	F074559	AGG	MKAQNPWQKLLSEHIKDKFAPPQPAGYYTREQVSKLWQKSMNTTSRMLNQMLEQKKVEMKRHPFIVARKDHRVIRNLKIFKILPTKHPHK
Ga0214919_100219755	F010463	AGG	VIAHPQELVLAATIHRVKLCEDRIKEFEQMVSTLTAQMAHNRSELASKGLASLVMGTTTPLDIPRELRPTFGRYRARGNRSHNTVQKRWGIWKAQYESGLTVKEIANAWGCHHSSIVNAKSKNFTARKSTGRASK
Ga0214919_100219758	F033350	AGGAGG	MSVVDVEVPQTKWSMLVWKTIKEKPYNDERVLMDIGGEVVVGRFIDGSFVSRSWGHSENDVRLWASWPKAPKW