Scaffold Ga0214919_10021234

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10021234
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7238
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014617	Metagenome / Metatranscriptome	261	Y
F026267	Metagenome	198	N
F044491	Metagenome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100212341	F044491	AGGCGG	MSYYTTASKQLISNYACISTLEPTEITIGENITVSALGAPFNGTFKVLDMPQYEFTGVDSTTGEFQFDVNVPRPNQIIYAATGSNVQYVVTYDGSVEYTQTCTWITVAALITFLGVTISNPSDDYTLATQATNAANLFCYRRRQESGYHDALSTSPGADATLGTLMYAAALWRSRGSIETAFAAFDTMGTPTQQSLTPIVKQLLGIPRPAVA
Ga0214919_100212343	F014617	AGG	MTYVIASSKVGVIGQPFIVAEGVNVAALLEGGFIVEQSTPKPKKPAKTSTDTNEEI
Ga0214919_100212345	F026267	AGCAGG	MKVKLELDLQDGRGKRVMTTNMFVVCEWEKLENRKVSDGKGIGYSDIACWAYHLCKLAGDSVPDTWREWVKQHPNMDLTSVDETNPNPTALALTEDN