Scaffold Ga0214919_10020373

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10020373
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7445
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (70.59%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016374	Metagenome / Metatranscriptome	247	Y
F030663	Metagenome / Metatranscriptome	184	Y
F044299	Metagenome	154	Y
F089835	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1002037314	F089835	AGGA	MRLTPLDERMNADIDALIAKLEAAKTSRTYLQRASLVGRVAEQCQSYEFYWEEKLYSLMD
Ga0214919_1002037315	F044299	GGA	MNQVSQYLISIDRPPYVNGRRVGQATPCVSYGQPSWFISFYDGYTHTSDPVFTDEDGLNGAPTVREYANNLGFEPCTN
Ga0214919_1002037316	F030663	AGGA	MYQLIFTFLVTTQAGIPGFHIERMSQFRELEDCEKTKTSMVAYMDKLVRENKMFPGVFECQRVQR
Ga0214919_1002037317	F016374	N/A	MNKEITLTPEGGRFYRAMTFHWVTVAVVMPPLAIAMIAAILNPFWFRDSMFNFVERRVNEFTRWRNNVKYRIYLGCDPVVWHTLKGDLK