Scaffold Ga0214919_10020288

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10020288
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7465
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007365	Metagenome / Metatranscriptome	352	Y
F093840	Metagenome	106	Y
F101158	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1002028810	F101158	N/A	MKYLKKYNENQEEQDPIFVITKIKEEYPSDSVKKMLEKEIKHWIPDEEDPDFYSTSGNGEAEDVIINQLIGWFDKKYYSLSDENFEKVKQLILKEYEFLNFNY
Ga0214919_1002028813	F093840	N/A	EEKEPQLLASTDLEPLTESEISVAGKGIFTSFLKSLTGLGHKESQPAWEKCPDNFLLYYYFPNIQSEDLKQIFSRFKSLSRYLDLIDYQSNEVNLYFGVKCDGNFEYGLHYNNLIPIGQFKLSQSVIKWICQIESKSAFSLKKELVNLTLFDILTFGKIKTDMMSFNPGYHEKKLSPIIKDRVISFGYYGIGKWDNGKLDEGEYLNIKNNFTTWLLSKKWGGKVLISVKPMSFWVYLNIKLK
Ga0214919_100202886	F007365	N/A	MSSMKEMSIRDYISKIDFKNDDWKLSQIKEDMRRFLGEEPGIDILYKKDVMVNEFTGESKEFKDIDKIFVIYTDTDDRFKKIEFILGEKI