Scaffold Ga0214919_10018952

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10018952
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7801
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011584	Metagenome / Metatranscriptome	289	Y
F012867	Metagenome	276	Y
F014736	Metagenome	260	Y
F050374	Metagenome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100189521	F050374	N/A	MKSMIDYKFIGWKNKDGSDKVWGAIYMEDRTNPRPKVLIFWGRRGHKLQTKMDREGWDLDKLVTSKKEKGYKTLMDYELKQVYPEFLNDLEKTTMWAL
Ga0214919_1001895218	F011584	N/A	MIDYIVTFFAVFFTDIFYTYYLKAVQDEQVMKASIWATVVFLIACVAVINYTTNYLLLIPAAFGAFFGTLVGMKLRKSKE
Ga0214919_100189522	F012867	GGAG	MMKDFMYEQQRESITEDWSDEISLAILSEKLNVPRVSYRIYYSKDNLTRRIFIFRGNCTPAETEIMLGLGFTFASDGDTENILDQPVEV
Ga0214919_100189523	F014736	GGAG	MNMPIVPDNVIKMWNDPRFEILAEVDKLLTGSKIWAGMEYTYHPIHPDKYLPVAEKIRKALDELKAEYGVEE