Scaffold Ga0214919_10018658

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10018658
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7883
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (16.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007859	Metagenome / Metatranscriptome	343	Y
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y
F019476	Metagenome / Metatranscriptome	229	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001865813	F009135	N/A	MNKPKYYLAINLPPNFDEVDADAIKTDLMAYINSKNQYGAMYGPKSSKKGITIDKVIYRTNED
Ga0214919_1001865814	F013524	N/A	MKTNKIVIDRLREFTQNNCNTTLDPKLCEDIRYLCDEVERFSHEIVKANNFMDEDHITIQRYKNKLSKYESI
Ga0214919_1001865816	F007859	GAG	MKKLLIIALLCTGCTSGMLLRYSYNRALETLPPCSRVHAINNNYITYSMVENSTNSVYVVYTNYYRAYYNCDGKIIKTTKN
Ga0214919_1001865817	F010081	N/A	MQDQIDSIIKKHCLKMQDVNKNKSIPMIVKELDGIVYDMYRELYGLRDIRASNYNLNSFTADDKKGHCC
Ga0214919_100186589	F019476	N/A	MKFRDFRMSQTLIVKVMNNKTKSARIILDIEWEAVDDSDLPSLWDWKRIKMPMDLTKVKYIGIQQPNGPENVTNWMGN