Scaffold Ga0214919_10018608

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10018608
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7896
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F059964	Metagenome / Metatranscriptome	133	Y
F090389	Metagenome	108	Y
F097335	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001860813	F097335	N/A	MSKRELTNEQQAISQLYSVLVAIVASDRTPKHTAEATIQTLEKLFNDENGPFQSTDELIGMTMAMGEAMNDVVRKRNKQIQRAAEGASILGDINWN
Ga0214919_100186088	F090389	N/A	MTIKQFQRKDALRVMNWCKRNVGLNYRRRTLPVLEWHSVSDDKDMGDYDFEDNIISVYKNNHTSVIEIIHTIIHEWAHYKQSTKKYYEYDTIYNYQDNPLEIQANELADKMKWQCRKDLF
Ga0214919_100186089	F059964	N/A	MNNKMTNEFTDVAYNTARNERPVYVNFSATKMSNSVKPNSIVYFKDFMGRQHKVVCRNKPEIKKACEFFSMLKAESAQITRIISDYPMSYGQIDKKFIPAVKRELKAMGLSSKQVENILIMYWA