Scaffold Ga0214919_10017946

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10017946
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8110
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (84.21%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F011284	Metagenome	292	N
F027777	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001794611	F027777	GAGG	MSEEMPAFWHQEPAKKKLPNETTDEWVVRVFGAFPDTEFDSRNDFRFLNLPKTQKENAEGFGVFDDGQNKK
Ga0214919_1001794613	F005702	GAGG	VIIFLVVFFGLLILQGVRLFAKHIDQQNYDRRQFYLYVAAELDKMDKIVAEGNQPKKPKEPELLLPTKNWVGRN
Ga0214919_1001794614	F005846	GAG	MTSFPLPARPQASAVPAWHIEFKKETAIEGKANGWRGWFDQETKQGYNRHGKFASNHNLMAERILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYADRMKEIEHLEAVTFDIPNNKLLRFVRLAHHKISSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPNYCSPSWQKQRIRW
Ga0214919_1001794618	F011284	N/A	MTSIGGVVDSKFTKKHELHMTTLQMAAVESMEKKYKRGVEEHGGTKLWEMPAVRLVENAIEEATDQLTYLLTLRSQMHIVMELARDGCTDETLTNPRARECCNLIYTTLTGQSKPL