Scaffold Ga0214919_10016179

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10016179
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8719
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009801	Metagenome	312	Y
F017289	Metagenome / Metatranscriptome	241	Y
F035670	Metagenome	171	Y
F075854	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100161793	F017289	GAGG	VKTKQEIKEEIIELYGATLALNEAMNFLHAQRMEKSKQMMALNHMLKEMEADDAEGTA
Ga0214919_100161795	F035670	AGGAG	MSDQELNLWEKALGWRKRQMILKQLDTDTNKIRNDALEEVAKEIEKMTAFGQDTIASFAVYIRNMKT
Ga0214919_100161797	F075854	GGAGG	MPRPKPPSPLKGRQIRMSDVEWLMFKERGGADWLRKYVRKKASLPITHYERQNERMQKGI
Ga0214919_100161798	F009801	N/A	MNECKKEYCEFIGSKAFEDDGGWSYDVWLAAQDAAFKRISRRFLGYGDIDYTGKEIARYVDFLARSNGSQDVPK