Scaffold Ga0214919_10015596

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10015596
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8940
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006696	Metagenome	366	Y
F071151	Metagenome	122	Y
F091603	Metagenome	107	Y
F103126	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100155961	F103126	GGAG	MSESMQKEIDALVAELSPKPGSLGILTTHEMVSHLRMAATRGTLIGWAAAERLTSARYKQEYDNLAQHCKQLELEIMELKR
Ga0214919_1001559610	F091603	AGGAG	MTIGRFANGNDSKRRVLGLAGEWSAREKLPGEAQPPAISIWRQPVYQPPKMDTPRPGASDHLKVRSRGI
Ga0214919_100155963	F006696	GGAG	MKFLKFLKDYWRDLTPAEVITKELAQAHLDRLEAEGAVEYAQAVLDLNLARIDRLNIRLGEYK
Ga0214919_100155964	F071151	GGAG	MNCCNANGDCTQGRDCPVRKQRIKEVNDAYANGFKDAQLNDPIDDIAYTFRDFLTVMTVVLCVWVVCLLIWGK