NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10015389

Scaffold Ga0214919_10015389


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10015389 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9025
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (80.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003067Metagenome / Metatranscriptome509Y
F006789Metagenome / Metatranscriptome364Y
F007027Metagenome359Y
F012572Metagenome279N
F020906Metagenome221Y
F046904Metagenome150N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100153891F006789N/AMALTDEEKAFLIKIGQELPVEVKETKTKDTSTEKIGE
Ga0214919_1001538911F020906AGGAMPTSAQVSVGITATLLVAANFMDQTVWLHNSGGALYVGDSNVTTANGFKLDTGDKMELPVGDNEGLYGIVASGTNTVFILKQVN
Ga0214919_1001538913F003067AGGVSQAQAYIAVALGIATLSGFMAGLVRHLVKYYLSELKPDGNGGHNLVGRVERIEIRVDKIYELLLEDRLSK
Ga0214919_1001538914F046904AGGMNSLDLMVVGMVCLFIGLFIWAAYEMGYKVGLGEGYLRGRNIAKALKEAEAKR
Ga0214919_1001538917F012572AGTAGGMSDQYELINLQAMTGKLFIDGELAAEYKVEQCDKCAMVTQLDHFGYQKSDPKENIIWFCKGCR
Ga0214919_1001538919F007027AGGCGGMSESIRFECRICKKITEQIERIVTDNLPANVKVLQCKVCSKMSVCLLVTYADV
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