Scaffold Ga0214919

Basic Information
Taxon OID	3300023184 Open in IMG/M
Scaffold ID	Ga0214919_10015007 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023184 Open in IMG/M

Scaffold ID

Ga0214919_10015007 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9181
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (30.43%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (28.57%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

9181

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (30.43%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (28.57%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001840	Metagenome / Metatranscriptome	627	Y
F006260	Metagenome / Metatranscriptome	377	Y
F010397	Metagenome / Metatranscriptome	304	Y
F015581	Metagenome / Metatranscriptome	253	Y
F024308	Metagenome / Metatranscriptome	206	N
F041194	Metagenome	160	Y
F065436	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001500714	F065436	N/A	MKYKYSLKIHNVVDYSELENVMNDYGAKGYRVTKAEFIGDSFESGRPMKKFVVYLEQKVK
Ga0214919_1001500719	F015581	N/A	VPVNFAVNVLKNMNELTKPNAFVFKAFIDDATRLCVCPRIDNKWSEQDIVYVHNYDGAFDDVLHEKNFSVLFVGYEKTDDTTGTFTLKNVNSQYLKSDTTIASEMYANSSFFETIEEGYQLFYEQPERQGEQTQTSE
Ga0214919_1001500720	F024308	N/A	VKKVILSKVEYEFLVECLEKLEKQTDNSLADPKWIDKLGSTQRLYELEMEYFKIKKYGEPSTKYDMVKWLLTKVKSKTLDF
Ga0214919_1001500722	F041194	N/A	MNDLQITCNYCDTPAKIKRDKIYMQCHCDDDRRIIDVREYLLEDKHHDYLYSMFSEEYEFYDEKCLTK
Ga0214919_100150073	F006260	AGGA	MEKELTIKDKVTNPIIIQHDDLKFDGKTITIPSYYINSICDYIKDYEVDGVPQVDIDDYIAFRDFLYDIQEYKNGGN
Ga0214919_100150075	F001840	N/A	MKDQDSIFLICDCFEHGLLVEKFKDEEEVSLSLFERGLKGRTLCWSERLRWCWQILRYGKPWSDFVILNTENQKQLKEFLNECK
Ga0214919_100150076	F010397	AGGAG	MNVSEFERTKPVVTMQKINELIKLIDEERVKTEILYRDRVRSLDDISVLLKEAKKSFVKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214919_10015007

Overview

Ecosystem & Geography

Associated Families

Sequences