Scaffold Ga0214919_10014970

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10014970
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9198
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (88.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003784	Metagenome	468	Y
F004110	Metagenome	452	Y
F015702	Metagenome	252	Y
F031792	Metagenome	181	Y
F083901	Metagenome / Metatranscriptome	112	Y
F093487	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001497010	F000821	GGAG	MNEEYLQAKADLCEKLAAKDIQEGEIARAIKNLERANSALYRLGLVREGEADD
Ga0214919_1001497011	F015702	GGAG	MIREIELEYTAYNLVKLARKVWGENATEYLAGRLESVITYNQMKVLIDSLKGEADE
Ga0214919_1001497012	F001477	AGGAG	MSNVYSIHPPKSPLILLYEVVEESGRAEWGGNSAEECLQWLSLAPTGSRVLVSGWESDEEDAHLVGQSLDITELIVKALSL
Ga0214919_1001497013	F083901	GGAGG	MTEVKRRINTATRNAVRDRNYRRVRDRALVRLSHLYPDTYKQLLAIERSFDEQEGKKWIGIDGFTSLSVGTHTRANGAGPLPAHTSNESSDQGNNGGEA
Ga0214919_1001497018	F004110	N/A	VTEVYPIVYELASSVASTIYRRYNQYVERDDIKQECLTWALTRSQYLIEQLSEPDTDKRKHNEQKIAWQMRRIAERYVRKEKAVKSGYFINDEAYYERVTVGQLLPFVIASVQNDTVIEVAQHMVQDGQPKGKSSPAEGGNLLAMLIDIKKAYLLLEVEDQVLLRLRHFDSFTLKQIAGQLECAVSTADRRCSTALRNLIDELGGVSPFK
Ga0214919_1001497019	F003784	GGAG	MYDNDKARVGHNDTDFAAYGLSDLASTIPKRDTSSAPSTNPLVDHPAVTGYRAVGVSTQDLVSFIESFASLRASRVKSVGHSQYAIAQGQKFESFTPADTIRELIEELADASNYIDFLAIKLLNLAHIMEVGLPDCD
Ga0214919_1001497022	F093487	AGGAG	MAVAIKPLRRRRRTAQRGKPMKQSQRWGKVVTTMPVPEGEITTAEILVQEVVPTEEDEDDDQDRST
Ga0214919_100149709	F031792	AGGAGG	MSYEPPLNDPDFYEEEGEAEPTRCFRCSNGLEEDDIVWANDEGQIVKEGNDTAWCVACLPSEGESK