Scaffold Ga0214919_10014254

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10014254
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9518
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (5.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F028489	Metagenome / Metatranscriptome	191	Y
F053077	Metagenome / Metatranscriptome	141	Y
F053753	Metagenome / Metatranscriptome	140	Y
F065418	Metagenome	127	N
F067397	Metagenome / Metatranscriptome	125	N
F070857	Metagenome	122	Y
F076869	Metagenome / Metatranscriptome	117	N
F098653	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001425410	F000716	N/A	MEKLKQDLQNYQINNKTYVKYDTDGLNQYQNYLYKRALYGLSSLTEQELVTMCSKKKQRIINVYKKAQIVLNKLKQDITISYSNFIFKTLFPNSPITEYLLSDTETDTSFKNTLTFRDLDINKDKIITIFMSEGILPKNFLSLELPQNQLPRLKNESNT
Ga0214919_1001425412	F053077	N/A	MLYQLPNGKVIHLTVDQYLELTDLDIQHLIALDAGDHMVNPFSESAVNINTKEKYYDFDYVSLDDDEVQNYKSDDQPFDDIIDLSGPLDN
Ga0214919_1001425413	F098653	N/A	MCNTITSVLGFDLDAEITDNEGNVLASGTTCNYIPEEKPDYVFNIDYYNKWTNFNEGLLNKIRDYKRYN
Ga0214919_1001425417	F053753	N/A	MNHQLKFGYSQLGTNILVKINCKMNKEQAIELEKKYPEICIWQTRNGYRIEGSFNTKQDNIYVYDKFEDFKLSLALNLNDFKINKLIDKNQALLNQANLELSVADLDLPF
Ga0214919_1001425419	F076869	N/A	MITTFMINEITKLINSAQKQNVKLSQEYVDALYNLNINDIIMLRNSYESEKILS
Ga0214919_100142542	F067397	N/A	MGKMKELYYELLHANNGEIPQEATIADLAKMNDLKIYEWREYERSQNNIKKPKNEGNIEWEQS
Ga0214919_100142543	F065418	N/A	MEYTVNDILKECDALVYEFQNSPKKRLRPMLDKRNYLIAILYYKFGYTEEKISTIYNIKRVSVSVSKKLPYTLLEYGDNVFKENAKEYLIKYPYDFPSFSNKYKKDKYITISFDIKTLEKIRAYRDIINEKSTAKTIKRLVTNSLKLWGK
Ga0214919_100142545	F070857	AGAAG	MKVICIDADNKPQNIPIEEWVKEGDMYNVTRIVRMGLQKNIYGFLLKEIQLSSRSFPYELYDSSRFLPIGILSNIKEEEKVNIEDVNLELI
Ga0214919_100142548	F028489	N/A	MIMKMIGKELKIKHTNNYSTFAILPMNRGVDSKHVQKIIASLRLQGCLRVVICCRTNIIEGEWKTYIIDGQHMATALEREGQPIPYIEINIESEEDLIQKMAYLNNSSKSWDMMNFINAWKMIRPDYMKLFKWKNMYDIEVTMLAIIGVNNAGVRYSTSIVKTGNFRITNPKAEDMCKAFNDIFLMIGKSDRAVKFQFLSAFMQAYTPKYNHDKTMIAINKHIKTVKLMAIGDETGAFIRKQIFKLPK