NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10013170

Scaffold Ga0214919_10013170


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10013170 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10054
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (4.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019447Metagenome229N
F026552Metagenome197N
F036695Metagenome169N
F086794Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1001317012F026552N/AMELTNVIEKLMNRDSFLNLLENDIIEKFEVSVSPYESKILVIKMFLNITKDEFIGTGESTPRLSEWEVRGKLWEDYNLDPAWWHAFIIPNKILKPLVGKDYFIKIILFVVDKNGIHLFTE
Ga0214919_1001317023F019447N/AMKKIPKDKLVSGLKILYKLWKREHDSDSDWPSKHYIEWEAGDPYKFYYKYEKQLGLGREAEDYYYWMNALEENEDNLDNDTLTVDNVIIPKYYTFDVETYEDRVEQVHVTYEGQVEGYFKEDQLYRSFYELGQGEVFDFYDFSETDRDYGDGEGNGIELRQITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLL
Ga0214919_100131708F036695N/AMEMTYTDKAILELLNNPKIIPPNDIIHEYTVASHNDVELLVIKVILNIDVSDKGQRGDGERMLYENNFDAYKLSETILKKILRPLGLLKKISWGVLIVIDASGNRLIEHSMIKN
Ga0214919_100131709F086794N/AMKIGKFILQESEKKQIREMYGLVTEQTQSPENNQEFLDWVKNATVMPFIAPNPYSNGDLKLGVQIRSNDGKTISAMDLKNPNQSQVINLIERLDVTTEDGKLVYRFGTDQGQLFNSSTFKANYDVIDNSYVVYSIVDENSDMIQKLKQYTKPGKINKFIVTVTPRLSSDLLKTGSKLFTTKPNILIVQ

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