Scaffold Ga0214919_10013170

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10013170
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10054
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019447	Metagenome	229	N
F026552	Metagenome	197	N
F036695	Metagenome	169	N
F086794	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001317012	F026552	N/A	MELTNVIEKLMNRDSFLNLLENDIIEKFEVSVSPYESKILVIKMFLNITKDEFIGTGESTPRLSEWEVRGKLWEDYNLDPAWWHAFIIPNKILKPLVGKDYFIKIILFVVDKNGIHLFTE
Ga0214919_1001317023	F019447	N/A	MKKIPKDKLVSGLKILYKLWKREHDSDSDWPSKHYIEWEAGDPYKFYYKYEKQLGLGREAEDYYYWMNALEENEDNLDNDTLTVDNVIIPKYYTFDVETYEDRVEQVHVTYEGQVEGYFKEDQLYRSFYELGQGEVFDFYDFSETDRDYGDGEGNGIELRQITMVSDVIPESNKKRKVMKESKLDSFIDSLNESETKFLIEKLQKKLL
Ga0214919_100131708	F036695	N/A	MEMTYTDKAILELLNNPKIIPPNDIIHEYTVASHNDVELLVIKVILNIDVSDKGQRGDGERMLYENNFDAYKLSETILKKILRPLGLLKKISWGVLIVIDASGNRLIEHSMIKN
Ga0214919_100131709	F086794	N/A	MKIGKFILQESEKKQIREMYGLVTEQTQSPENNQEFLDWVKNATVMPFIAPNPYSNGDLKLGVQIRSNDGKTISAMDLKNPNQSQVINLIERLDVTTEDGKLVYRFGTDQGQLFNSSTFKANYDVIDNSYVVYSIVDENSDMIQKLKQYTKPGKINKFIVTVTPRLSSDLLKTGSKLFTTKPNILIVQ