Scaffold Ga0214919_10013097

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10013097
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10091
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (92.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F003863	Metagenome	464	Y
F017972	Metagenome	237	Y
F031792	Metagenome	181	Y
F044438	Metagenome	154	Y
F064708	Metagenome	128	Y
F087106	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001309716	F044438	AGGAG	MANTEMQYVKNRIQKLEKDFAAFASLLIQAGIVEVKEEDGVQVYAVNKVALDGK
Ga0214919_100130972	F031792	GGAG	MGYEPDWNDPVFYAEEGEPEVKCNICGDLLDEDDIVWADIDGQIVKDGNDTAWCVSCLPSEGDSDE
Ga0214919_1001309720	F087106	GGAGG	MAANENTKFQINYKLNDGTLINLYASDVKDLETGLADLGMISTLIRSVGNDLHGGATSLETTLVSAGVNPTVAAVAQQFNATPVAQTPAAPLAGHTCRHGVMALREGTSARGPWKGYMCAAPKGATDKCDTIWVR
Ga0214919_1001309723	F064708	AGGAGG	MQKKLGRFWFYGGRNSGIGLGFNVDKHHITVDLLFWYAGWEF
Ga0214919_100130973	F000821	GGAG	MNEEYLRAKFNLCLDQAEKNIKEEDIALAIKNLERANTAMARLFGLEEDND
Ga0214919_100130975	F001477	GGAGG	MSNVYTIHPPKSDLILFYEVVEPDGDNTWGGASAEHCIEWLSLAPSGSRVLVSAWDSDEEDAHLVGQTIDITEIVRAASL
Ga0214919_100130976	F003863	GGAGG	MTESRQVSGMQAISYRNYRRARDRALVRLSHLYADEYRQLLVEERELDEQEGKKWVGVADNTRLTITTHTRANAVPPFGDPADAGEDEGYDGGEA
Ga0214919_100130977	F017972	GGAGG	VRTKHLQLVSSTHSVTMTTRSNVRSHFGPVNPASTTLLAQETLRANQLAQLSELLNSLESVVESLNYKSFTLYDTLNTVIEEVSVALSQQTEDAGTKNC