 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300023184 Open in IMG/M |
| Scaffold ID | Ga0214919_10012082 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10678 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (86.67%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (85.71%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004231 | Metagenome | 447 | Y |
| F014365 | Metagenome | 263 | Y |
| F015570 | Metagenome | 253 | Y |
| F020664 | Metagenome | 222 | Y |
| F029673 | Metagenome | 187 | N |
| F032957 | Metagenome | 178 | Y |
| F047564 | Metagenome | 149 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214919_1001208210 | F004231 | AGGAG | MSVKPKDFQHEICVYLEGIGECLVCFDILTPGEELDADHSDDYEIDFAVFDEQDKHITYDIDRKQYNHCENKAMDEMRDITTQWHKEWETCFD |
| Ga0214919_1001208215 | F047564 | N/A | MTQTESLTESEKATQCPWLSQLKPYSSQETFLEYLTQHYALMAMNPKTIEIARYRTKELKADFPTLGILIAQRIKELKNAMPKVSI |
| Ga0214919_1001208218 | F020664 | AGG | MQGHLFKLTESERHIIKTIGKGNYAEGVRICIMWGAHFYNLGLNTEMDIRHIGLVTVSSTDNYPHE |
| Ga0214919_1001208220 | F014365 | GAGG | MKTFQIFKNVSYEYFVDAETLEDAQNKIIEENPEPESEELIEWVFADEHNGVNWTYEPVTNS |
| Ga0214919_100120825 | F032957 | AGGAG | MDDFTPTTRCFSRSLREAYPKDYVNENIIEGPFYSAPNIHDIPVLFALIAVLGMIAVSIWRYF |
| Ga0214919_100120828 | F015570 | GAGG | MNEELDRAFDELEFDVTDEIRKSKYLAEQKEIACGVTDGTIQRALVRDLTENLRSLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS |
| Ga0214919_100120829 | F029673 | GGAG | LTKAEMITHLRMAACNENTVTGMSNAFDLGQEHERDVIASIIFNMVKDQHLAQNIVDTMRVRE |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |