Scaffold Ga0214919_10011240

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10011240
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11187
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008750	Metagenome / Metatranscriptome	328	Y
F024742	Metagenome / Metatranscriptome	204	Y
F088507	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100112404	F024742	GGA	MNNETQRIMEALMLIYGSDLQAATITVLLKDGDTAVRFITQTLPQRETEK
Ga0214919_100112406	F088507	GGAGG	MNCCNSHGECTQGRDCPIRKQRAEETNKAYINRSNGLEPDILDDFVASIKGLIAVIVVVTGITLIAFAIWGK
Ga0214919_100112409	F008750	AGGAG	MRKVRFMELMKEPFKKPTPLEMIAAELSDAHLEKLNAETAVEYAQSIVDYNVTRITRLNARLEEYK