Scaffold Ga0214919_10010663

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10010663
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11593
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (38.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001883	Metagenome / Metatranscriptome	622	Y
F034842	Metagenome	173	Y
F039632	Metagenome / Metatranscriptome	163	N
F046370	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001066310	F001883	N/A	MAYKNTGEFNVKYPTRRRMANILKRILRNDIVQNNGTLVESIRINAKVTGFGSLEIEIVAMYYFIFLNNGAFLWNGGVITPRDYVNTFTRELAAAGITNEIYSQYVEWISQNYPILEVADILESDQRLTYTFYALDPPAGFTPNYPLTV
Ga0214919_100106633	F039632	N/A	MSDTLKEIADNLGVGLINGSYLSGIANYYGVDLATSTDLMADILTAVGGDPSTSTDYLQDIVIELGQDTTVNANWMEGWLLSTTGPVFTDDRITENGDSRFTEDSLNERVTQ
Ga0214919_100106636	F046370	AGGAG	MPSTTIIAQPSVMMPAYNPIKYIIDNTNKNEPGFRYIFSIYPAGSNTLIAQYRVLPVFSTGYGEQDISRLMQSLVTWNFTSGQVNESWYQYKIRLGYEYIDNIDYITTLQDNGGNVRISFTAHGFVAGDQVVIAQTGTGPTNNPALEGLHTVLSATANQFTVNVLFSTIGESTANGNVSYADQRKTQVLDDEIIEDQEVFNGAYSLGIYAQGAFPYIDYYSTLNPSFALTSLTNPNTSSTAASITDNIFYLMCRVYSGVEYTLTYFDMNGTQLGQDAPYNPANGLFNFPIDTATYSITEDFYITIKANDVAGTQFEYYFNYDNRCAINEDILYYLDRMGSWQSFAFQLKTYEKGQISREMYNQHVDGQVTDGQWEYSSDAMGSRTYNTNVSNTLDLNTNWMDQYNANRFQELLTSPQVFYDNGTDTRACTIEATSFENFRQRNKNLIKQSVTIKLALNTPING
Ga0214919_100106639	F034842	N/A	MISYQSIVDKITAFYDNHAQVKKVGSDFKEQMVNFATKDEKYPLVYVVPTGVTPYQNVSIFNLELYCFDIIQMDRANITTILSDTQQILQDLYLEFTFSDDYDFDIDGQPTFIPLNNDLLDYAAGWQMNLSVVIPSWTNCPIPKKIYTAYSQALQWDSIPLQNSIIFFCNGVQWDVQTGIASGEIGAFVAMCNANLQGSDFTQYGTYFDNGDNRVRLEMPYHVYNTFCPNGEVTLEITAI