NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10010489

Scaffold Ga0214919_10010489


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10010489 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11730
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015718Metagenome / Metatranscriptome252Y
F018350Metagenome / Metatranscriptome235Y
F048122Metagenome148N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100104891F018350GAGMTFKEIVNKYPIVNTDWWECNHNHIGSMSHRIMAVTGIDSYNGMKQFHQYLGITSYFTRIRNDDGSSVIFNCDPWMREFKMYYTRGGIKNGIYECTRIDGVNGGNDVYIMVTSVEGSRVWCMDVFER
Ga0214919_100104892F048122N/AMNNKQILMEVKDKLKRMIREVLLEENWTNWSLIIDRTGKIHDCGMDHASWMDNHWKPKKMAPGYKINVQSHGDSEQLLYVDERANSGILRKKLVAFAEDNGIKSIVWTNRVTYRGRLEQL
Ga0214919_100104894F015718N/AVKIVPIIRDGKIVMGDINEQYPVTNVMWRYMDNMTLGEYLGSLGVDYKSYGFIKSFPRSFYVRIGFYQPRYAVVTNSHLHDNLVRVMDNDPWHRKFKTFPVGNKVLGNDVYKYFPLMATGLSNYGSGNYNCYVITTTVNGKSVYCVDVLN

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