Scaffold Ga0214919_10010489

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10010489
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11730
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (44.44%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015718	Metagenome / Metatranscriptome	252	Y
F018350	Metagenome / Metatranscriptome	235	Y
F048122	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100104891	F018350	GAG	MTFKEIVNKYPIVNTDWWECNHNHIGSMSHRIMAVTGIDSYNGMKQFHQYLGITSYFTRIRNDDGSSVIFNCDPWMREFKMYYTRGGIKNGIYECTRIDGVNGGNDVYIMVTSVEGSRVWCMDVFER
Ga0214919_100104892	F048122	N/A	MNNKQILMEVKDKLKRMIREVLLEENWTNWSLIIDRTGKIHDCGMDHASWMDNHWKPKKMAPGYKINVQSHGDSEQLLYVDERANSGILRKKLVAFAEDNGIKSIVWTNRVTYRGRLEQL
Ga0214919_100104894	F015718	N/A	VKIVPIIRDGKIVMGDINEQYPVTNVMWRYMDNMTLGEYLGSLGVDYKSYGFIKSFPRSFYVRIGFYQPRYAVVTNSHLHDNLVRVMDNDPWHRKFKTFPVGNKVLGNDVYKYFPLMATGLSNYGSGNYNCYVITTTVNGKSVYCVDVLN