Scaffold Ga0214919_10010468

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10010468
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11742
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (70.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002099	Metagenome / Metatranscriptome	593	Y
F005320	Metagenome / Metatranscriptome	405	Y
F042293	Metagenome / Metatranscriptome	158	N
F058807	Metagenome	134	Y
F088893	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1001046812	F058807	GAGG	MQVDLIKEHEDGSATFQFDLTNEEAKALLTFGILEAIKAGLREGERLTVEGDDIEDISNTGLSD
Ga0214919_1001046817	F005320	AGGA	MSIDTVKPVKVAGEIFWSNWMNTFNTKFNEDNKKYECTIGNLSDAACEKLKELGINIKNKESMGNFIVAKSTYLFTPVDEEGNPVDIAKMGNGTKCHAVISSYRHKMSAKFGAAPSIKKLIITELKVYVPEGAEEAETADDVL
Ga0214919_1001046818	F088893	N/A	VKHIDKNQILFSVEGETFKIKIGEDLDLEEVYTVLLSALVHLEDLASGNTAHPSQELH
Ga0214919_100104682	F002099	GAG	MRKLIVVLLSLGLLASTPSSSSDNCSVREFYGIAYTVHNPTERHQQMSMWLTKHQTLCKSSDMTVIWNNLSEWAGSADSAELRHKVVIAYKNAVAREANK
Ga0214919_100104689	F042293	GAG	VLNITFEELKEALKRLDEVTLLELLGLQSDDLVERFDDVIEKKQEYLIKELD