Scaffold Ga0214919_10009569

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10009569
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12472
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018175	Metagenome	236	Y
F021538	Metagenome	218	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100095695	F021538	N/A	METTIINCDCMCHSLHVRPDVESKTVDISLWNYGFNDGKLHWKKRLQILIDGFAYSDLVVLDKEELDKLISTLEEARGKIA
Ga0214919_100095696	F018175	GGAGG	VEKLPKNQKEYYHNRIREFEKRTGKCMNVKGVSKFYDYNIENAIYNTPAALEMMEKHKCYIYYDALVEEDPRSNGTHWAKYGFAYVNGKTYKYYYETKSWGQEIKNIDAIQCKDIKWKAAKLDIYNFPYLDPGEDYLPYAIENKHIGSNFDSFLKTNNIKLKRDINWAVKMLGHGKMMSREGNPSLTLFPKKYDHAESTITTTDLFAEDWVVVPNKLFKDVLDDLNAGKTIRRKSWHPDWGVGKYARYGKLIYSDLIADDWEVVDVVAEVNQVQNDHLKDRNGN