Scaffold Ga0214919_10009283

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10009283
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12708
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001731	Metagenome	644	Y
F005452	Metagenome / Metatranscriptome	400	N
F005946	Metagenome / Metatranscriptome	385	Y
F010982	Metagenome	296	N
F016529	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_100092831	F005946	N/A	ILVVSVEVFQSVTAPGNQIMSDSFQPSPFILGRSLSNRIIGLLGPFIEVENMCL
Ga0214919_1000928316	F010982	GGA	MVRLSRADEIVAHTAGLARESTYGSNPKFQGNKGNFHNAVVIHSEAAGAEIAVARYLGIDNFTPTVNTFKNEPDINWDGVAIEVKQTPHRNGHFIVSNDDRDSDMGILVVGESPTYYIAGWIPVGVAKRSRFASSSGGWWVSQVNLQPIENLLKSHHAPASI
Ga0214919_1000928317	F016529	GAG	MRQLQFDCSICAKLYGDGRKMHGLTKTAELTLNEWFTQCSGCGAFGIKIIDDAMVNGLE
Ga0214919_100092832	F005452	N/A	MTIEADVRTPLQTTLSTIAANVYNGIPEAMTSPSIVLVCGSPYLESTLINGSTTKVKINFLITGVVGYSSNAAALTNLEDLMIAIISTMPGGYVVGDVSSPVPLEVGTGKFLTSDLQVSTYYTD
Ga0214919_100092837	F001731	GGA	MSVFNPVWRVTIGGVQYQTSILANLTITSGRTNIYEQAQAGYTNIELINLDQANVIISINDSLSIELQDSTATFIPIFGGSVVEVGISVAELGNVAYAQRIKIIALGALARLPKALTNGVLTQDFDGNQIYKILKTVLFAQWQAVPAALQWNTFNPATQWQNAQNTGLGEIDQPGNYELAQRSSSRTDVYSLVSGLANSGLGYIYEDAQGLISYADSTHRTTYLATNGYVDLSANNAQGSGLSIQQRTGDVRNTITLKYGTNSTSEVSATDTASVGLYGQLAQIFTTTVKHQADAQDQADFYLELRAYPQYNFNSITYQLTNPEIDDGDRDSLINVFMGMPVAIADLPLNMSSGTYLGFVEGWTFQAAYNQISVSLNLSPLAFSLQAMRWNDVPIVETWNSIIPTLDWEHATQVA