Scaffold Ga0214919_10007232

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10007232
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15026
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (66.67%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000722	Metagenome / Metatranscriptome	922	Y
F007579	Metagenome	348	Y
F008130	Metagenome	338	N
F021771	Metagenome	217	Y
F061855	Metagenome	131	N
F068840	Metagenome	124	N
F095478	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000723210	F007579	AGG	MATPTTAEINAQIGNATRELAPGTTWRYNEPGDGYYCLEWMDNPALQPTEAATMAKATELASAPPIVG
Ga0214919_1000723214	F021771	N/A	MAATPVHAVNITGVQQTLKALNSFDNRYRRQVTKDIKNAGDQIITEARSMVAHFDNSLMNGAPLSGMVRGREKNWKTSAVQAGFKVKVGVRASKERYVNYQRGGIPSGPKGRGTTGTYTEQVAYGSKPYQLMVVQQADAAGAIYDHAGRQTNSTFVTNLDTEVGPEPRAIDVAIERNKEAVIDKVRQIVQTVENLISRDIEAQSGN
Ga0214919_1000723215	F068840	GAG	MQLRLKATFNDGTVNEVVTNLSTVVAWERKYKRKASEMAQGIGVEDLAYLCYEATRASGTTVPGSLDQFIATLLSIDVLETQDPKAVTAQ
Ga0214919_1000723217	F095478	AGGA	MAYVIASPRLGTVGDTYEPADGVNIEALIEGGFIKSTSKSTKSDKPSKDTNEE
Ga0214919_1000723219	F061855	AGGCGG	MSNYTVTSKQLLDNYAVVQTLEPTEIAIGESVTIASVAVPFNGTFVVQGLPQYLYIGIDSDGFPLYNTNVALPNQVLYRCTGTDVDRVATTTGTLTYNQVCTWVSATDVEDWLGIGTATAADATFLTLCAAAASAFCFLRRQEAGYHDSLTVLPSTAVGLGTRAYGGFLYRQRGSVTDFASFDGMVSGGSNGLSPMIKQLLGVNRAQVA
Ga0214919_100072325	F000722	N/A	MTDTPYPEPGISQETRQAMYPDTYSDKYNKVFKQFIDDIFRPNHIAKPELPDHSILLDELVIMYDAHMTIGGEQNRFNASVLKAAINVIRAL
Ga0214919_100072327	F008130	GGAG	MADAKTYVYEVYTTHLDTDQMVLVQIFRDPDNGKVLHAQIAFKSAVGDSWQTPYQLEKK