Scaffold Ga0214919_10006830

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10006830
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15560
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F058557	Metagenome / Metatranscriptome	135	Y
F078706	Metagenome	116	N
F083714	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000683015	F078706	AGGA	MSKLGNALGKKYEENRLSVLTRQFELGGHTFKVRVPAVNEIEAIYNYFKSPNEDVVDEIYQDMIKDFKDDKDDGIEVKDNDILIEGRSMREAARNKHVLQYRITEYIKFLVPETGSLEDLTYADVEIEFPLAIQLTLVEKINEVIAPDYKEIRSK
Ga0214919_1000683016	F083714	N/A	MVFNGHTIQDIDALDEATMNDIMVMYADGLIGNKSLLVNQGMLVTGVFNYLRGNNSQPYTLKGVLGSVYDYVYNEVKADASDSLLRFISQAPDFKMDRFESK
Ga0214919_1000683018	F000934	AGTAG	MASLTTILINSESVSINDHRFIGQVLSRNQRIATSEILTVQPFQFEMKPMNYLLYSQSRQLLSVLRTNDRQLEQYLNFGATGWLNYIAYQGDMTSAQIGACQFQTSSANKTIVLGSLPSIASTAYIVKTGDFLQINRYAYIATADVLRGSGSTVSIPVHRTILTTLTSPMSAVIGQYGTTQSLGGETYIGTTFPVILQDYPTYTLVPMTNDSFIAWNGTFKAFEAVL
Ga0214919_1000683019	F002085	AGCAG	MNIITPIQNTNNIRMADFVRVTTASAVYRFATTPTALTIPAVDSQPFDALGSLVKINDVQRDIKSTANETSVTLVGIDTALLGWVLGHDIKGSKIEMWHGFFNTNNELITTGGTGGLYKFFTGYISTFQISEQWMEDVRQYVGTISVSASSIQIILQNRNAGRYTNNNAWTFFNPTDTSMNRVNFIETINYDFGKTG
Ga0214919_100068309	F058557	N/A	MAIKRYENVDVNTLTFGTDAYGQYTTTITKKFTTRPLVSDVKNSLAITERYRIYQDLIQFTMNYTPWMKDIVDNQNLYSITWRSKDWRITDVLESNDRMSVTLMCYRSDPATKV