NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10006424

Scaffold Ga0214919_10006424


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10006424 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16174
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004430Metagenome / Metatranscriptome438Y
F017130Metagenome / Metatranscriptome242Y
F019137Metagenome / Metatranscriptome231Y
F023587Metagenome209Y
F033431Metagenome / Metatranscriptome177Y
F085703Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_100064241F033431AGGMAKLKITRTDGSILEGEITPAVEYEFEQYAKKGFHKAFREDEMQS
Ga0214919_1000642413F017130GAGMGDLEIHGVYGWQKLEDIPMIDTVPCQLCNEPTLASDITITAVIVDGVVKSGTWSCNKCKAVNG
Ga0214919_1000642415F023587N/AMKASEILLSATDIMQDRGAVYGHAKINQGRIASRLSSLFDIPVEDYQACLAMVEVKLSRIQESPTHIDSYIDACAYLALAAQLKTEEDDLYV
Ga0214919_1000642417F085703GGTGGMATIEIYENPTKRAEQYFCVYCGFDMTIAGVCIDCNEYKSAVTLDEYYELNGHYPKPRLV
Ga0214919_1000642423F004430GGAGGMARGVQVLDMLIPQGGWIIVGNDYEGITFLECEPITKAQFEAGFAQFDAWKAEKDSKAAADKAALLAKLGITADEAKLLLS
Ga0214919_1000642428F019137N/ALKITRTDGSILEGEITPAVEYEFEQYAKKGFHKAFREDEMQSSVYWISWCVTRRSGETVKPFGIEFIETLKSVEVLDSDPLS
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