Scaffold Ga0214919_10006202

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10006202
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16530
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (13.04%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004696	Metagenome	427	Y
F017128	Metagenome	242	Y
F025025	Metagenome	203	Y
F059972	Metagenome	133	Y
F076068	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000620216	F076068	N/A	MLKESTYVDAASAFGTPVGVAHITGYKNKKEQIKEEGIESFKNIEPDLELNAIICDAIEIGMYQKLQREVYKIKQRGDKRLKETTIYNRAFIEITNDENYITKSGQIF
Ga0214919_1000620217	F059972	N/A	MIFISMKLKELLLKIYEGHCERLPDESDEDFLTRCGNDTWNQQFGISQLSNIPNVMKTKILVPNKIQPK
Ga0214919_1000620218	F017128	N/A	MNSSITHIDIEKYNSIEEQRHNTMSDNNFIEWCKQYNIGSRVEVVSEQRLKANELMSQYTKYTHYISKRN
Ga0214919_1000620219	F004696	GGA	MKLKQDEIVLMKKIKGLQDGKPKWAAAEQLDEIRSAIELLERYNSITEQDLEDEDNYLKQVFVSHPPKAKA
Ga0214919_1000620223	F025025	N/A	KRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEASVRKYIGELEVETKMDKLETSLIKNVLSKKDKKELLASKVMEGALVSNKAMLDTAYSTFYNGGSLSVETTTGNKEDND