Scaffold Ga0214919_10005931

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10005931
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17012
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (72.73%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001125	Metagenome / Metatranscriptome	769	Y
F001562	Metagenome / Metatranscriptome	670	Y
F003422	Metagenome / Metatranscriptome	487	Y
F003690	Metagenome / Metatranscriptome	473	Y
F004051	Metagenome / Metatranscriptome	455	Y
F004840	Metagenome / Metatranscriptome	421	Y
F005741	Metagenome / Metatranscriptome	391	Y
F011299	Metagenome / Metatranscriptome	292	Y
F038241	Metagenome / Metatranscriptome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000593110	F011299	AGG	MMTRKHFEATAEILKFASDKIHPAVFSKMVNDFALMFAKENSNFNVNKFHEASGYHVPNFTSR
Ga0214919_1000593117	F004051	AGGA	MTVDNKTYEVGDLFTTLKSNVTGVIKQIIPNSSGSVRVELDTDEGTRWTTVSKTN
Ga0214919_1000593119	F005741	AGG	MAERFRVEIYDANKANDVTIYSNSGVDKEYLTELVFSNLRNFNGKVNAYVYDSHKKNKTTAMFLDEDTVAKAQLI
Ga0214919_1000593122	F003422	N/A	VCTGDCDALIEYTYKDGFGWPNGVMQITCPCNSTCTLLSVEDATIPYTDTQLPTKEETMEETTVGTINDLLTPYQPDMLVTYKKISGYSDTEFLTDKVRNIEWELHNARTNSKIASALTNKISLVKDIIVEAYSDSDDQETLRSIAEALEIELTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVESQNGNIEIVDTEVTNVREN
Ga0214919_1000593123	F000311	GAG	MYFELTAPDRLSMEMAYWDAQITGLDPEAMSALTFNIGTGSIEKVSRLRDKYGLKESYVSDYQPTGYIRS
Ga0214919_1000593124	F001043	AGGAG	MSEYKDGFTDGYKFAREEIMEKLSEIDIADIDSWILDRLSEMIEGGNL
Ga0214919_1000593126	F001125	GGCGG	MGDRANFGFRDHKGDIVFLYGHWAGHQMLGHLAEAVSAAEPRWTDESYATRICISNLIGESWQPLTGWGIYINQIGDNEHKIPVIDWANQTFTLYEEDLETIVFSSSLDAFVKKYSLSTSMV
Ga0214919_1000593129	F000868	GGTGG	MSFLENENEMVIDMTYSEIGAMLVEDWVNANLDEGQMFADYRFAEMSDSNYLKGRFNLFYDLNVGDQYYLECEEK
Ga0214919_100059313	F003690	GGAG	MITSGIQLQLNNYGLEFDSFLGAIYLPWHSIAIATALLIAYKIYKRKKITK
Ga0214919_1000593130	F038241	GAGG	MLGYTKTDLDEMGNAMHDAKLFYIMKSDVTHVDQDPLVEGLLKAQDFLEGLWAEGYFD
Ga0214919_1000593134	F000441	GGAGG	MEMTNEYINDRLNIAQQLLWGGSETENIEAHNIIAELIKDRTETIGAK
Ga0214919_1000593135	F000852	GGA	MATKREYLKSQGITVGVRGRFSGAAKTVIAEALAKGMTFTDPTPGTKTK
Ga0214919_100059315	F001562	GGAG	MSMTQFERDLTIKESFIDLLNEIYPEVKIGYSTFTPAEILECCDPIAFSIGVIEHEDYMLERGELDDEEM
Ga0214919_100059319	F004840	GGA	MYKVTCAYDENAPHWEQTYENEFGAWENFFLFTDWAFADEYSTVNLYTPTGKCYTRIFYREGRRVVTK