Scaffold Ga0214919

Basic Information
Taxon OID	3300023184 Open in IMG/M
Scaffold ID	Ga0214919_10005618 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300023184 Open in IMG/M

Scaffold ID

Ga0214919_10005618 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	17667
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (67.50%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

17667

Total Scaffold Genes

40 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (67.50%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	34.2611	Long. (^o)	-83.95	Alt. (m)	Depth (m)	2
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

34.2611

Long. (^o)

-83.95

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000369	Metagenome / Metatranscriptome	1222	Y
F000376	Metagenome / Metatranscriptome	1216	Y
F000671	Metagenome / Metatranscriptome	945	Y
F008814	Metagenome / Metatranscriptome	327	Y
F012975	Metagenome / Metatranscriptome	275	Y
F068743	Metagenome / Metatranscriptome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000561815	F068743	N/A	MPWKIERGAAGCAGYAVVKEDSGKLVGCHPTQSAAKAHLAALYASEADSKKIKKSILRGE
Ga0214919_1000561826	F012975	AGGA	VLNLTLKGVEVFIERSKTKNQESYWDNYDLLIWKQNPGGFTNIKGMFRKNQWGIAERIPVNEQGIWKLPVKYVKHFK
Ga0214919_1000561830	F000671	GAGG	MEKILCYSCNKSKNKLNVKKSSLIPINLFMCETCITSKFEPRWVVILAGRQLGSDAVKEFIVKKRYCGNDISASELLV
Ga0214919_1000561836	F008814	AGGAG	MDKQMTVLEEIIKEIGEELYQRWYNGMAIEDRTEEASKAMAINAGETAVWVIQTFMNKFNAAADELKDKD
Ga0214919_100056186	F000369	N/A	MSEIELSEHFDRMNRVVEELLKGSTPTQIATITGIQRKEVLELIDDWKDVVHNDSNIRDRAREAISGADQHYAMLIKESWKTVEDADQAGQLGVKATALKLIADIETKRIGMLQSVGVLENNEIASQIAETERKQEILVKILKEVTSTCPKCKMDVAKRLSQITGVIESVPAEESDVV
Ga0214919_100056188	F000376	AGGA	MSTYQEKAKECKCCGKHVPLPTVLKDYNGTVLCPTTFANVIEYKRIWKAAGVRPMGSVRKHFSEYVQQIVEETIDKNEDGTIQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0214919_10005618

Overview

Ecosystem & Geography

Associated Families

Sequences