Scaffold Ga0214919_10004932

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10004932
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19183
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039599	Metagenome / Metatranscriptome	163	Y
F046202	Metagenome	151	Y
F072298	Metagenome	121	Y
F078231	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000493218	F078231	GAGG	MNTEPELIDLYAMFALMMQKPVKGRSKIDAAYEAFEQAQAMMDVREDFMDKRSD
Ga0214919_1000493220	F046202	AGGAGG	MFDSFGDFFWTFMAMSGFMFWICLTIFVGMVIKRNREKRGIYYE
Ga0214919_1000493231	F072298	AGAAGG	MRAIVKAAIKIPEMVFAFETICEDDTKPGGKEVTPEDYTDEEIVSEAEYRLMTYFEDGHINNDMRMDEEGVGNDVAVKDIRMLIAFLKKYKTVDGHWSKYTNHLLK
Ga0214919_100049327	F039599	AGGA	MLSEETIKQIFFQSDRPRKDPLIGDEVDIVQFAHNIELFVEVEFSRREHARCVEIVKQMNRAVGEALENQRPA