Scaffold Ga0214919_10004700

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10004700
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19801
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (12.90%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F006463	Metagenome / Metatranscriptome	372	N
F007860	Metagenome / Metatranscriptome	343	Y
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000470011	F007860	GGAG	MKSNYLAGIYFIAGFLTSFSLICQGTELYINLAGVTLFFYLTFSLTEALEDLGL
Ga0214919_100047003	F006463	N/A	MKSGTIYEQLDWWQRQWRGSFDLHLYLEICRIKKNENQKFKPMKRFKATFKTWAYVGAPVKLETRIVEAYDFQHVKNLIQKNDDIIIEIKQIEK
Ga0214919_100047004	F009958	N/A	MKNRNLEFWNKGWELTYEFTGWTYSIAGTWEFNDYDEVSEYAFIELDVEVSEKWETETDDNLQPHVLGVRILEDLRLEMQEAINSDLQHYNFWEWKASNDESNYNFYHEL
Ga0214919_100047005	F009004	AGG	LVTHINLKTMKTEFNKIIDFLETQQQEDKLNTNQLHLIIQTLATFLDDEQLQEVENLFNQFKK
Ga0214919_100047008	F001808	N/A	MGKLFIVIISILLYSCSAQYHLNKAIKKGFKCDETGDTIRITTLDSIPVIVNDTIVWEKFISTKDTVIQYKNVYVPKTRIQLKREYKIKIKTIYKDKVVEKAQARAEGKKNQPKGNLNLLFVGVGIGLLLSWLWKNGIKSVI