Basic Information | |
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Taxon OID | 3300023184 Open in IMG/M |
Scaffold ID | Ga0214919_10004373 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 20711 |
Total Scaffold Genes | 40 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (32.50%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007859 | Metagenome / Metatranscriptome | 343 | Y |
F009135 | Metagenome / Metatranscriptome | 322 | Y |
F013524 | Metagenome / Metatranscriptome | 270 | Y |
F019476 | Metagenome / Metatranscriptome | 229 | N |
F090299 | Metagenome / Metatranscriptome | 108 | N |
F101154 | Metagenome / Metatranscriptome | 102 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214919_1000437313 | F090299 | N/A | MKKVIVSKVEYEFIIFSLEELYTLSSDETISDKWLSKLEPTKKLFDLELDFYNIRNDGQTPTKKEMVKWLLTKLKNKSLDL |
Ga0214919_1000437322 | F007859 | GAG | MKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNRYITYSMIENSTNNVYTAHTNYYRAYYNCDGKIIKITPNN |
Ga0214919_1000437324 | F013524 | N/A | MKTNKEVVDRLKEFTNNNCNTTIDPKLCEDIRYLCDEVERFSREIVKANNHMDEDHITIQRYKNKLEKCQQNLSIYEPF |
Ga0214919_1000437325 | F009135 | AGG | MTNNPKYYLTVNLPPNFDDVDAEAIKTDLMAYINSKNQYGAMYGPKSHKKGITIDKVIYRTNED |
Ga0214919_1000437330 | F019476 | N/A | MNKTKSARIVLDIEWECVDDSDLPSLWDWKRIKLPMDLTKVKYVGIQTPNGPENVTNWMG |
Ga0214919_100043737 | F101154 | AGAAG | MRKSRVDKIRLLNEENEVDVTSDMLNSYKNNTKKRVTKKGLEKYFNNLILIMQSRELV |
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