NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214919_10004373

Scaffold Ga0214919_10004373


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10004373 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20711
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (32.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007859Metagenome / Metatranscriptome343Y
F009135Metagenome / Metatranscriptome322Y
F013524Metagenome / Metatranscriptome270Y
F019476Metagenome / Metatranscriptome229N
F090299Metagenome / Metatranscriptome108N
F101154Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000437313F090299N/AMKKVIVSKVEYEFIIFSLEELYTLSSDETISDKWLSKLEPTKKLFDLELDFYNIRNDGQTPTKKEMVKWLLTKLKNKSLDL
Ga0214919_1000437322F007859GAGMKKLLIIALLSTGCTSGMLLRYSYNRALETLPPCSRVHAINNRYITYSMIENSTNNVYTAHTNYYRAYYNCDGKIIKITPNN
Ga0214919_1000437324F013524N/AMKTNKEVVDRLKEFTNNNCNTTIDPKLCEDIRYLCDEVERFSREIVKANNHMDEDHITIQRYKNKLEKCQQNLSIYEPF
Ga0214919_1000437325F009135AGGMTNNPKYYLTVNLPPNFDDVDAEAIKTDLMAYINSKNQYGAMYGPKSHKKGITIDKVIYRTNED
Ga0214919_1000437330F019476N/AMNKTKSARIVLDIEWECVDDSDLPSLWDWKRIKLPMDLTKVKYVGIQTPNGPENVTNWMG
Ga0214919_100043737F101154AGAAGMRKSRVDKIRLLNEENEVDVTSDMLNSYKNNTKKRVTKKGLEKYFNNLILIMQSRELV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.