NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214919_10004006

Scaffold Ga0214919_10004006


Overview

Basic Information
Taxon OID3300023184 Open in IMG/M
Scaffold IDGa0214919_10004006 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21740
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (58.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026879Metagenome196Y
F027772Metagenome / Metatranscriptome193Y
F029651Metagenome187Y
F030428Metagenome / Metatranscriptome185Y
F075657Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0214919_1000400622F027772N/AMVDKLTELKTQIGLVYDIMRHTDAKDPRQEQLRELLATMYQELNRLEPPKDRLDKPLLSDDSL
Ga0214919_1000400629F030428N/AMNTKKYENLTRICGGNITPDALKGVFCDLEFQTTAVKQEFWQYMFEMGETFGAIQSFVVQDRLTTEKNYA
Ga0214919_1000400632F026879GGAGMQKQLAVLSLLFSTTLLAADYSKSKELYMPNESGGYVVLTVEECKIAEARAKGFDSRAYATESDSEKSVVHEGCWNSPDTAAAPKVQGVKIIPLVNLWFDGEIVFYPQTMFGPERKRWDVITPTIEVKPNV
Ga0214919_1000400633F029651AGTAGMNKDYYYTEQEWAKMVGYGTVPADRQPPTDRHWNGEQQLNKSTGEVEVYYNGMWTAK
Ga0214919_100040065F075657GGAMRIIVIWAVWLALVLWWLTPELNHVRDQINEHNVAIKKALEE

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