Scaffold Ga0214919_10004006

Overview

Basic Information

• Taxon OID: 3300023184
• Scaffold ID: Ga0214919_10004006
• Source Dataset Name: Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21740
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 34.2611
  • Long. (^o): -83.95
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026879	Metagenome	196	Y
F027772	Metagenome / Metatranscriptome	193	Y
F029651	Metagenome	187	Y
F030428	Metagenome / Metatranscriptome	185	Y
F075657	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0214919_1000400622	F027772	N/A	MVDKLTELKTQIGLVYDIMRHTDAKDPRQEQLRELLATMYQELNRLEPPKDRLDKPLLSDDSL
Ga0214919_1000400629	F030428	N/A	MNTKKYENLTRICGGNITPDALKGVFCDLEFQTTAVKQEFWQYMFEMGETFGAIQSFVVQDRLTTEKNYA
Ga0214919_1000400632	F026879	GGAG	MQKQLAVLSLLFSTTLLAADYSKSKELYMPNESGGYVVLTVEECKIAEARAKGFDSRAYATESDSEKSVVHEGCWNSPDTAAAPKVQGVKIIPLVNLWFDGEIVFYPQTMFGPERKRWDVITPTIEVKPNV
Ga0214919_1000400633	F029651	AGTAG	MNKDYYYTEQEWAKMVGYGTVPADRQPPTDRHWNGEQQLNKSTGEVEVYYNGMWTAK
Ga0214919_100040065	F075657	GGA	MRIIVIWAVWLALVLWWLTPELNHVRDQINEHNVAIKKALEE