Basic Information | |
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Taxon OID | 3300023184 Open in IMG/M |
Scaffold ID | Ga0214919_10004006 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1503 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 21740 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (58.33%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F026879 | Metagenome | 196 | Y |
F027772 | Metagenome / Metatranscriptome | 193 | Y |
F029651 | Metagenome | 187 | Y |
F030428 | Metagenome / Metatranscriptome | 185 | Y |
F075657 | Metagenome | 118 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0214919_1000400622 | F027772 | N/A | MVDKLTELKTQIGLVYDIMRHTDAKDPRQEQLRELLATMYQELNRLEPPKDRLDKPLLSDDSL |
Ga0214919_1000400629 | F030428 | N/A | MNTKKYENLTRICGGNITPDALKGVFCDLEFQTTAVKQEFWQYMFEMGETFGAIQSFVVQDRLTTEKNYA |
Ga0214919_1000400632 | F026879 | GGAG | MQKQLAVLSLLFSTTLLAADYSKSKELYMPNESGGYVVLTVEECKIAEARAKGFDSRAYATESDSEKSVVHEGCWNSPDTAAAPKVQGVKIIPLVNLWFDGEIVFYPQTMFGPERKRWDVITPTIEVKPNV |
Ga0214919_1000400633 | F029651 | AGTAG | MNKDYYYTEQEWAKMVGYGTVPADRQPPTDRHWNGEQQLNKSTGEVEVYYNGMWTAK |
Ga0214919_100040065 | F075657 | GGA | MRIIVIWAVWLALVLWWLTPELNHVRDQINEHNVAIKKALEE |
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